Best R Libraries Data Science: Tools for Analysis, Visualization & ML
By Rohit Sharma
Updated on Apr 22, 2025 | 27 min read | 20.4k views
Share:
For working professionals
For fresh graduates
More
By Rohit Sharma
Updated on Apr 22, 2025 | 27 min read | 20.4k views
Share:
Table of Contents
As data science moves quickly forward, strong tools for research, visualization, and machine learning are needed more than ever. As 2025 approaches, R remains one of the best programming tools for these tasks. R libraries for data science make workflows more efficient by providing specialized tools for working with data, statistical models, machine learning, and processing large datasets. These libraries simplify complex tasks, allowing professionals to focus on extracting useful insights.
In this article, we explore the top R libraries for data science in 2025. Keep reading!
Ready to master the tools top data scientists use? Explore our Online Data Science Courses and gain hands-on experience with R, Python, machine learning, and more.
Data manipulation in R refers to the process of modifying, organizing, or transforming data to make it more useful or suitable for analysis. It involves operations such as adding, deleting, renaming, filtering, or updating data elements in a dataset to meet specific requirements. Whereas, R data wrangling tools involve organizing, cleansing, and transforming raw data, often overlapping with data manipulation tasks. It addresses missing values, discrepancies, and dataset merging for study. Both are crucial stages in getting data ready for effective and correct decision-making.
Boost Your Data Science Career with our Industry-Ready Programs Today:
The following R libraries data science are essential for efficient data manipulation in R.
dplyr is one of the most widely used essential R packages for data manipulation. It provides fast and efficient functions that simplify filtering, selecting, grouping, and summarizing data. It also integrates well with data frames and tibbles, making it one of the go-to R libraries data science for wrangling datasets.
Key Features:
How it Works:
By offering efficient tools that work effectively with data frames and tibbles, dplyr simplifies data handling. It filters, selects, mutates, groups, and summarizes data using a consistent, easy-to-understand syntax.
Code Example:
library(dplyr)
# Create a data frame
data <- data.frame(
Name = c("Alice", "Bob", "Charlie"),
Score = c(90, 85, 88)
)
# Selecting specific columns and filtering data
filtered_data <- data %>%
select(Name, Score) %>%
filter(Score > 85)
print(filtered_data)
When working with large datasets, data.table is one of the most advanced R packages, offering faster performance and memory efficiency than base R data frames. It is designed for high-speed data manipulation, making it one of the best R libraries data science for big data applications, financial modeling, and large-scale analytics.
The data.table library enables fast filtering and aggregation and works well with optimized indexing and intuitive syntax, even with millions of rows of data. Its reduced syntax complexity further improves readability and execution speed while eliminating the need for complex instruction sets.
Key Features of data.table
How it works:
The data.table package in R is an enhanced version of the base data.frame, optimized for fast and memory-efficient data manipulation. It simplifies operations like filtering, aggregating, joining, and reshaping data with concise syntax and excellent performance.
Code Example:
library(data.table)
# Create a data table
DT <- data.table(
Name = c("Alice", "Bob", "Charlie"),
Score = c(90, 85, 88)
)
# Fast filtering
DT[Score > 85]
# Grouping and aggregation
DT[, .(Avg_Score = mean(Score)), by = Name]
tidyr is undoubtedly one of the top R packages for data cleaning. Cleansing and reshaping involve ensuring that the data is in a tidy format meant for analysis, where each column is a variable, each row is an observation, and each cell is a single value.
Key Features of tidyr
How it works:
`tidyr` simplifies data cleaning by transforming messy datasets into a structured format. It provides
Reshaping: Converts data between long and wide formats using pivot_longer() and functions to reshape, separate, and combine columns, making data easier to analyze. pivot_wider().
Code Example:
library(tidyr)
# Example dataset
data <- tibble(
name = c("Alice", "Bob"),
math_score = c(90, 85),
science_score = c(88, 92)
)
# Convert wide to long format
long_data <- pivot_longer(data, cols = starts_with("score"), names_to = "subject", values_to = "score")
print(long_data)
# Split a column into multiple columns
data_split <- separate(data, name, into = c("first_name", "last_name"), sep = "_")
print(data_split)
Want to build your data science skills? Begin with R Tutorial for Beginners and learn step by step.
Graphically, data visualization finds trends, correlations, and anomalies in data graphs. Thus, as it simplifies complicated information, exploratory data analysis (EDA), statistical modeling, and machine learning all depend on it. Learning R packages for predictive modeling improves your ability to make data-driven predictions. Some of the data visualization libraries in R include:
ggplot2 is perhaps the most popular and widely used R libraries data science and allows customizable and even publication-quality visualizations. Users can create complex visualizations with ggplot2, which is based on the Grammar of Graphics. You can create complex multi-dimensional plots and simple bar charts using ggplot2 because it allows flexible scaling of data visualization. Many analysts use Data Visualization in R programming to create graphs, plots, and dashboards.
Key Features of ggplot2:
How it works:
By a layered approach, `ggplot2` generates intricate and customizable visualizations. It lets users create plots by adding geometry, themes, data, and aesthetics.
Code Example:
library(ggplot2)
data <- data.frame(
Category = c("A", "B", "C"),
Value = c(10, 20, 15)
)
ggplot(data, aes(x = Category, y = Value)) +
geom_bar(stat = "identity", fill = "steelblue") +
theme_minimal()
Check out R Programming Tutorial to start your journey in R programming!
Plotly is one of the most useful R packages because it allows users to build interactive visualizations that help with the dynamic exploration of information. Rather than static plots, with Plotly charts, users can zoom, pan, hover, filter, and do much more with data points. This creates a more compelling and intricate view of trends and relationships over time.
Key Features of Plotly:
How it works:
Plotly combines data, layout adjustments, and aesthetics to create interactive visualizations. It gives you the freedom to make dynamic charts with user input.
Code Example:
library(plotly)
# Create a sample dataset
data <- data.frame(
Name = c("Alice", "Bob", "Charlie"),
Score = c(90, 85, 88)
)
# Generate an interactive bar chart
fig <- plot_ly(data, x = ~Name, y = ~Score, type = 'bar', marker = list(color = 'blue'))
# Display the plot
fig
The leaflet is among the R libraries that provide users with tools to design interactive maps and carry out cartographic and other spatial visualizations. It allows users to plot geographic data, markers, and layers dynamically. Leaflet has been applied in many fields, including geospatial analysis, urban planning, environmental monitoring, and location-based storytelling.
Leaflet integrates seamlessly with Shiny and R Markdown, enabling dynamic visualizations for spatial data.
Key Features:
How it works:
The leaflet is used to make interactive maps in R. Users can see spatial data by zooming in and out, panning, and changing the labels on the maps. It works with lots of different data sources and lets you use layers, popups, and tile maps.
Code example:
library(leaflet)
# Create an interactive map
map <- leaflet() %>%
addTiles() %>% # Add default OpenStreetMap tiles
setView(lng = -122.4194, lat = 37.7749, zoom = 10) %>% # Center on San Francisco
addMarkers(lng = -122.4194, lat = 37.7749, popup = "San Francisco")
# Display the map
map
Working as a senior data scientist? upGrad offers a Post Graduate Certificate in Data Science & AI (Executive) designed specifically for experienced professionals.
Modern data science relies heavily on predictive modeling and automation, making machine learning an important component. Learning Machine Learning with R makes it easier to implement algorithms for real-world applications.
The caret (Classification and Regression Training) library is a comprehensive framework in R that streamlines machine learning workflows. It enables easy data cleaning, model training, hyperparameter tuning, and evaluation through a unified interface for various algorithms.
Key Features of Caret:
How it works:
Caret (Classification and Regression Training) simplifies machine learning in R by using a consistent interface for model training, tuning, and evaluation. It also simplifies performance analysis, feature selection, and data preparation.
Code example:
library(caret)
# Load dataset
data(iris)
# Train a simple decision tree model
model <- train(Species ~ ., data = iris, method = "rpart")
# Make predictions
predictions <- predict(model, iris)
# View the first few predictions
head(predictions)
Must Read: 20 Exciting Machine Learning Projects You Can Build with R
The randomForest package excels at performing tasks in classification and regression using forests of trees. This package uses an ensemble learning method, building several decision trees and averaging their predictions to improve accuracy.
Key Features:
How it works:
Random Forest builds many decision trees and then combines their results to make the system more accurate and less likely to overfit. It picks subsets of data and features randomly for each tree, ensuring that forecasts are different.
Code Example:
library(randomForest)
# Sample dataset
data(iris)
set.seed(42)
# Train a random forest model
rf_model <- randomForest(Species ~ ., data = iris, ntree = 100)
print(rf_model)
Check out the R Developer Salary in India blog to learn about career growth and salary prospects in this field.
The R package xgboost provides an optimized implementation of gradient boosting, widely used for its performance and accuracy.
Key Features:
How it works:
Extreme Gradient Boosting, or XGBoost, is an optimized machine learning algorithm that improves decision trees by means of boosting techniques. By consecutively training trees and reducing errors, forecast accuracy is increased.
Code example:
library(xgboost)
data(iris)
iris$Species <- as.numeric(as.factor(iris$Species)) - 1
dtrain <- xgb.DMatrix(data = as.matrix(iris[, -5]), label = iris$Species)
model <- xgboost(data = dtrain, nrounds = 10, objective = "multi:softmax", num_class = 3)
predictions <- predict(model, dtrain)
head(predictions)
Need a boost in your professional career? Explore upGrad’s Professional Certificate Program in Business Analytics & Consulting in association with PwC India.
R is well-known for its statistical computation capability. This makes it a go-to instrument for statistics and data analysis and decision-making in many fields, including social sciences, finance, and healthcare. From simple descriptive analysis to advanced inferential statistical analysis, R provides a broad spectrum of statistical capabilities that enable efficient data interpretation and understanding.
For hierarchical or group data, the R `lme4` package fits both generalized linear mixed-effects models (GLMMs) and linear mixed-effects models (LMMs). While GLMMs stretch this to non-normal response variables, valuable in sociology, biology, and economics, LMMs handle data with both fixed and random effects, often used in repeated measures or grouped data settings.
Key Features:
How it works:
For hierarchical data, lme4 conforms to both linear and generalized linear mixed-effects models.
Code example:
library(lme4)
model <- lmer(Reaction ~ Days + (1 | Subject), data = sleepstudy)
summary(model)
The forecast package is considered significant for time series analysis. It helps examine data where the main variable of interest changes with time, such as stock market forecasts, economic trends, or sales projections.
Helping users solve challenging forecasting issues, the program supports ARIMA, ETS, and machine learning-based techniques. It also offers a means of visualization to evaluate model performance and automate forecasts.
Key Features:
How it works:
Forecasts simplify time series analysis using statistical models
Code example:
library(forecast)
fit <- auto.arima(AirPassengers)
forecast(fit, h=12) %>% plot()
Time-to-event data analysis, which depends on the survival package, is common in medical, technical, and business environments. It helps estimate rates of survival, failure, and client turnover.
The software lets users fairly compare survival rates by using parametric survival models, Cox proportional hazards models, and Kaplan-Meier estimators.
Key Features:
How it works:
Survival offers tools for analyzing time-to-event data, such as patient survival rates.
Code example:
library(survival)
fit <- survfit(Surv(time, status) ~ sex, data = lung)
plot(fit)
Read More: 10 Best R Project Ideas For Beginners [2025]
R depends on good data management to enable smooth analysis. Data sources cover databases statistical tools, CSVs, and Excel files to APIs. By having customized packages for structured and unstructured data, R offers consistent reading, writing, and format transformation. These systems handle many encoding formats, control huge data, and maximize performance.
The readr library imports CSV files into R. For huge datasets, base R functions like read.csv() are slower and memory-intensive. readr improves performance and memory efficiency by automatically recognizing column kinds and reading data as a tibble, preserving data integrity.
Key Features:
How it works:
readr offers a quicker and more effective method of importing tabular data into R.
Code example:
library(readr)
df <- read_csv("data.csv") # Read a CSV file
Check out 20 Common R Interview Questions & Answers to boost your interview preparation today!
Haven lets users import and export SPSS, SAS, and Stata datasets without commercial software. This is useful in social sciences and corporate analytics, where these formats are widespread. haven preserves variable labels and factor levels.
Key Features:
How it works:
It helps to import data from proprietary statistical tools smoothly.
Code example:
library(haven)
df <- read_sav("data.sav") # Read an SPSS file
The jsonlite package simplifies working with APIs and web-based JSON data. It provides flexible parsing capabilities, allowing users to transform R objects into JSON and vice versa. This makes integration with web services, APIs, and NoSQL databases seamless, making jsonlite an essential tool for working with modern data sources.
Key Features:
How it works:
jsonlite is a powerful R tool that can read, write, and convert JSON data. It's made so that R and web apps or APIs can easily share data.
Code Example:
library(jsonlite)
# Convert R data frame to JSON
data <- data.frame(Name = c("Alice", "Bob"), Score = c(90, 85))
json_data <- toJSON(data, pretty = TRUE)
print(json_data)
Thinking about a career in data science? Explore upGrad's Top 10+ Highest Paying R Programming Jobs To Pursue in 2025 blog.
Reporting in research and data science is the process of compiling and presenting data analysis findings in a clear, ordered manner, that is, tables, charts, or written reports. Reproducibility guarantees that others may replicate the same analysis with the same results, therefore promoting accuracy and cooperation.
The knitr package allows users to embed R code into documents, creating dynamic and automated reports. It supports formats such as HTML, PDF, and Word, making it useful for research, data documentation, and analysis. With knitr, users can execute real-time code within a document. This package is widely used for generating well-structured reports that include tables, plots, and inline calculations, enhancing productivity and data storytelling.
Key Features:
How it works:
By inserting R code into documents, knitr automates report generation.
Code example:
library(knitr)
kable(head(mtcars)) # Formats a table for output
rmarkdown expands Markdown by allowing users to integrate text, code, and illustrations into a single document. It embeds live R code chunks that are automatically executed when the document is rendered, ensuring reproducibility. This makes it ideal for interactive notebooks, dashboards, and reports in data science. rmarkdown is widely used in academia and industry for generating reports that automatically update with new data.
Key Features:
How it works:
R code, text, and outputs are merged in rmarkdown into one document.
Code example:
library(rmarkdown)
render("report.Rmd") # Renders an R Markdown file
Users of bookdown can produce technical papers, research notes, and books using R. It adds cross-referencing, citation powers, and multi-page document support to stretch rmarkdown. Academic research, e-books, and open-access material are all routinely published via bookdown. It's a great tool for big-scale documentation projects since it lets HTML, PDF, ePub, and GitBook publish seamlessly.
Key Features:
How it works:
Bookdown extends R Markdown for technical papers and book publishing.
Code example:
install.packages("bookdown")
bookdown::render_book("index.Rmd", "pdf_book") # Compile a book
Want to boost your data science skills? Explore upGrad's Why Learn R? Top 8 Reasons To Learn R blog now!
For enhanced productivity in R programming for data science, streamlined workflow management is essential. It improves code maintenance, readability, and efficiency. Several R packages simplify coding tasks, automate repetitive actions, and ensure well-documented, reproducible results.
The following essential R packages optimize data pipelines, automate documentation, and simplify package development to enhance workflow and productivity.
The %>% pipe operator introduced by the magrittr package makes R code more efficient and understandable. Magrittr lets users link actions linearly instead of deeply nested several function calls, hence improving readability and lowering the demand for too many parentheses. When data wrangling and transformation call for several consecutive steps, this is especially helpful.
Key Features:
How it works:
By enabling function chaining via the pipe operator, magrittr enhances code readability.
Code example:
library(magrittr)
mtcars %>% head(3) # Displays the first 3 rows of mtcars
R developers who wish to create, document, and distribute their packages absolutely must have the devtools package. Devtools combines several tools to simplify package development, so facilitating building, testing, documentation, and publishing of R packages.
It automates labor-intensive manual processes, including package setup and maintenance, therefore simplifying the CRAN or GitHub submission procedure.
Key Features:
How it works:
Tools available from devtools help to streamline R package generation, testing, and distribution.
Code example:
library(devtools)
create("mypackage") # Creates a new package structure
The roxygen2 package helps R developers generate structured documentation directly from code comments, making it easier to maintain and update documentation. Users can create help files, function references, and package documentation automatically by writing special comment tags above function definitions.
Key Features:
How it works:
roxygen2 simplifies the process of writing and maintaining R package documentation. It converts specially formatted comments into structured help files.
Code example:
#' Add two numbers
#' @param x First number
#' @param y Second number
#' @return Sum of x and y
#' @export
add_numbers <- function(x, y) {
x + y
}
Offering a mix of theoretical knowledge and practical experience in data science, upGrad offers education in association with prestigious universities and business leaders. Whether you are a novice or a working professional trying to upskill, upGrad's immersive and flexible learning style helps you move into a data science job more quickly.
upGrad's data science certification programs are developed in cooperation with top institutions and industry professionals to overcome skill gaps, therefore improving employment possibilities. To equip students for the demands of the real world, these courses mix academic knowledge with practical experience.
Key Features of upGrad's Data Science Certification Programs:
upGrad is well-known for focussing on mentoring programs and networking tools heavily. The company provides wide mentoring and networking chances since it understands that industry contacts and professional advice affect career development.
Mentorship Benefits:
Networking Opportunities:
These mentorship and networking programs form a crucial part of upGrad’s commitment to learner success.
Starting a data science career calls for career help to negotiate a competitive employment market in addition to technical knowledge. upGrad provides thorough professional support to enable students to land new jobs.
Career Support Services:
Many learners have successfully transitioned into data science roles, with an average salary increase of 52% after completing upGrad programs.
With a blend of industry-aligned certification programs, mentorship, and robust career transition support, upGrad helps aspiring data scientists succeed in one of the most sought-after fields.
Becoming a data scientist requires more than just completing relevant coursework. Real-world expertise with R libraries data research, mentorship, and the correct environment are also needed. Data science is growing rapidly, and professionals with the right skills and industry training can advance their careers.
Start a data science career now with upGrad's Structured Learning Pathway, professional mentorship, and career support. The programs enable job switchers and skill boosters to reach their professional goals.
Change can be intimidating, but it doesn’t have to be. Start your journey to a rewarding career in Data Science by connecting with upGrad experts today!
Unlock the power of data with our popular Data Science courses, designed to make you proficient in analytics, machine learning, and big data!
Elevate your career by learning essential Data Science skills such as statistical modeling, big data processing, predictive analytics, and SQL!
Stay informed and inspired with our popular Data Science articles, offering expert insights, trends, and practical tips for aspiring data professionals!
759 articles published
Get Free Consultation
By submitting, I accept the T&C and
Privacy Policy
Start Your Career in Data Science Today
Top Resources